PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G282300.1
Common NameB456_008G282300, LOC105762556
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 234aa    MW: 25791.1 Da    PI: 5.1416
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G282300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1160112155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++ +h  +Er+RR+++ + ++ Lr llP      +++K   ++    +v YIk+Lq
  Gorai.008G282300.1  60 KKLMHRDVERQRRQEMATLYASLRNLLPLeY---TKGKRAISDHMNGTVMYIKYLQ 112
                         5789*************************77...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1356127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.60E-1058116No hitNo description
PROSITE profilePS5088812.45559111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-860112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-1060130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDELFLFQFP SIPNPQNETP QDKVLDYVVP MDGSGNTHLY SSMGSGATGN DDDDDNGEKK  60
KLMHRDVERQ RRQEMATLYA SLRNLLPLEY TKGKRAISDH MNGTVMYIKY LQKRVSELSY  120
KRDELKKVLN STGFDHGMSS DGAVLSTAVV HQSLDGGVEV VISTGFGARA LTLSRVLELL  180
VQEGLDVVSC VSTRINGGLA HTIQSEVTDL TLVDVPRLEQ KLSEEISSLN RIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6182801e-136JX618280.1 Gossypium hirsutum clone NBRI_GE63693 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435765.11e-172PREDICTED: transcription factor bHLH120-like isoform X1
SwissprotQ9STJ61e-44BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A0D2Q3D91e-171A0A0D2Q3D9_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-44bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]